Here, you can learn how to use tidymicrobiome to do the data processing and analysis for the LC-MS metabolomics data. It contains several parts.

If you are new to R or the tidyverse

We recommend that you start by learning some basics about R and the tidyverse first, then return here when you feel ready. Here are some resources to start learning:

Part 1. Install tidymicrobiome

You can learn how to install tidymicrobiome, and update it. You can also find here how to download the docker version of tidymicrobiome and build your own docker image based on tidymicrobiome.

Part 2. massdatabase package and mass_dataset class

You can find here how to download the demo data and create mass_dataset class by yourself. And how to use mass_dataset class organize your omics data and process it.